FastQC Summary

Read Totals

Library Sizes ranged between 65,024,076 and 96,878,892 reads.

Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.

FastQC Summary

Summary of FastQC flags for each parameter

Per Base Sequence Quality

Heatmap showing mean base qualities for each library

Per Sequence Quality Scores

Heatmap showing mean sequence qualities for each library

Per Base Sequence Content

Heatmap of summed base distributions along each read

Per Sequence GC Content

GC Content Heatmap normalised to theoretical GC content in the Drerio Transcriptome

GC Content Distributions for all reads showing theoretical GC content from the Drerio Transcriptome

Sequence Length Distribution

Sequence Duplication Levels

Adapter Content

Universal Adapter Content

Overrepresented Summary

Total overrepresented sequences for each library

Overrepresented Sequences

## Overrepresented_sequences missing from 1_KB_A10_R1.fastq.gz
## Overrepresented_sequences missing from 1_KB_A10_R2.fastq.gz
## Overrepresented_sequences missing from 10_KB_B6_R1.fastq.gz
## Overrepresented_sequences missing from 10_KB_B6_R2.fastq.gz
## Overrepresented_sequences missing from 11_KB_B7_R1.fastq.gz
## Overrepresented_sequences missing from 11_KB_B7_R2.fastq.gz
## Overrepresented_sequences missing from 12_KB_B8_R1.fastq.gz
## Overrepresented_sequences missing from 12_KB_B8_R2.fastq.gz
## Overrepresented_sequences missing from 13_KB_B9_R1.fastq.gz
## Overrepresented_sequences missing from 13_KB_B9_R2.fastq.gz
## Overrepresented_sequences missing from 14_KB_C10_R1.fastq.gz
## Overrepresented_sequences missing from 14_KB_C10_R2.fastq.gz
## Overrepresented_sequences missing from 15_KB_C11_R1.fastq.gz
## Overrepresented_sequences missing from 15_KB_C11_R2.fastq.gz
## Overrepresented_sequences missing from 16_KB_C12_R1.fastq.gz
## Overrepresented_sequences missing from 16_KB_C12_R2.fastq.gz
## Overrepresented_sequences missing from 17_KB_C1_R1.fastq.gz
## Overrepresented_sequences missing from 17_KB_C1_R2.fastq.gz
## Overrepresented_sequences missing from 18_KB_C2_R1.fastq.gz
## Overrepresented_sequences missing from 18_KB_C2_R2.fastq.gz
## Overrepresented_sequences missing from 19_KB_C3_R1.fastq.gz
## Overrepresented_sequences missing from 19_KB_C3_R2.fastq.gz
## Overrepresented_sequences missing from 2_KB_A11_R1.fastq.gz
## Overrepresented_sequences missing from 2_KB_A11_R2.fastq.gz
## Overrepresented_sequences missing from 20_KB_C4_R1.fastq.gz
## Overrepresented_sequences missing from 20_KB_C4_R2.fastq.gz
## Overrepresented_sequences missing from 21_KB_C5_R1.fastq.gz
## Overrepresented_sequences missing from 21_KB_C5_R2.fastq.gz
## Overrepresented_sequences missing from 22_KB_C6_R1.fastq.gz
## Overrepresented_sequences missing from 22_KB_C6_R2.fastq.gz
## Overrepresented_sequences missing from 23_KB_C7_R1.fastq.gz
## Overrepresented_sequences missing from 23_KB_C7_R2.fastq.gz
## Overrepresented_sequences missing from 24_KB_C8_R1.fastq.gz
## Overrepresented_sequences missing from 24_KB_C8_R2.fastq.gz
## Overrepresented_sequences missing from 3_KB_A1_R1.fastq.gz
## Overrepresented_sequences missing from 3_KB_A1_R2.fastq.gz
## Overrepresented_sequences missing from 4_KB_A6_R1.fastq.gz
## Overrepresented_sequences missing from 4_KB_A6_R2.fastq.gz
## Overrepresented_sequences missing from 5_KB_A7_R1.fastq.gz
## Overrepresented_sequences missing from 5_KB_A7_R2.fastq.gz
## Overrepresented_sequences missing from 6_KB_B11_R1.fastq.gz
## Overrepresented_sequences missing from 6_KB_B11_R2.fastq.gz
## Overrepresented_sequences missing from 7_KB_B12_R1.fastq.gz
## Overrepresented_sequences missing from 7_KB_B12_R2.fastq.gz
## Overrepresented_sequences missing from 8_KB_B3_R1.fastq.gz
## Overrepresented_sequences missing from 8_KB_B3_R2.fastq.gz
## Overrepresented_sequences missing from 9_KB_B5_R1.fastq.gz
## Overrepresented_sequences missing from 9_KB_B5_R2.fastq.gz
## No overrepresented sequences were detected by FastQC

Session Information

R version 4.1.0 (2021-05-18)

Platform: x86_64-pc-linux-gnu (64-bit)

locale: LC_CTYPE=en_AU.UTF-8, LC_NUMERIC=C, LC_TIME=en_AU.UTF-8, LC_COLLATE=en_AU.UTF-8, LC_MONETARY=en_AU.UTF-8, LC_MESSAGES=en_AU.UTF-8, LC_PAPER=en_AU.UTF-8, LC_NAME=C, LC_ADDRESS=C, LC_TELEPHONE=C, LC_MEASUREMENT=en_AU.UTF-8 and LC_IDENTIFICATION=C

attached base packages: parallel, stats, graphics, grDevices, utils, datasets, methods and base

other attached packages: pander(v.0.6.4), DT(v.0.18), scales(v.1.1.1), readr(v.1.4.0), dplyr(v.1.0.7), stringr(v.1.4.0), magrittr(v.2.0.1), ngsReports(v.1.8.1), tibble(v.3.1.2), ggplot2(v.3.3.5) and BiocGenerics(v.0.38.0)

loaded via a namespace (and not attached): Rcpp(v.1.0.7), lubridate(v.1.7.10), here(v.1.0.1), lattice(v.0.20-44), tidyr(v.1.1.3), Biostrings(v.2.60.1), zoo(v.1.8-9), assertthat(v.0.2.1), rprojroot(v.2.0.2), digest(v.0.6.27), utf8(v.1.2.1), plyr(v.1.8.6), R6(v.2.5.0), GenomeInfoDb(v.1.28.1), stats4(v.4.1.0), evaluate(v.0.14), httr(v.1.4.2), pillar(v.1.6.1), zlibbioc(v.1.38.0), rlang(v.0.4.11), lazyeval(v.0.2.2), rstudioapi(v.0.13), data.table(v.1.14.0), jquerylib(v.0.1.4), S4Vectors(v.0.30.0), rmarkdown(v.2.9), labeling(v.0.4.2), htmlwidgets(v.1.5.3), RCurl(v.1.98-1.3), munsell(v.0.5.0), compiler(v.4.1.0), xfun(v.0.24), pkgconfig(v.2.0.3), htmltools(v.0.5.1.1), tidyselect(v.1.1.1), GenomeInfoDbData(v.1.2.6), IRanges(v.2.26.0), fansi(v.0.5.0), viridisLite(v.0.4.0), crayon(v.1.4.1), withr(v.2.4.2), MASS(v.7.3-54), bitops(v.1.0-7), grid(v.4.1.0), jsonlite(v.1.7.2), gtable(v.0.3.0), lifecycle(v.1.0.0), DBI(v.1.1.1), stringi(v.1.6.2), farver(v.2.1.0), reshape2(v.1.4.4), XVector(v.0.32.0), bslib(v.0.2.5.1), ellipsis(v.0.3.2), ggdendro(v.0.1.22), generics(v.0.1.0), vctrs(v.0.3.8), RColorBrewer(v.1.1-2), tools(v.4.1.0), forcats(v.0.5.1), glue(v.1.4.2), purrr(v.0.3.4), crosstalk(v.1.1.1), hms(v.1.1.0), yaml(v.2.2.1), colorspace(v.2.0-2), BiocManager(v.1.30.16), plotly(v.4.9.4.1), knitr(v.1.33) and sass(v.0.4.0)